From: Autoinflammatory gene polymorphisms and susceptibility to UK juvenile idiopathic arthritis
SNP | CHR | Position | Gene | Major allele (allele 1) | Minor allele (allele 2) | MAF Case | MAF Control | pHWE Control | Case genotype frequencies | Control genotype frequencies | p-value | Odds ratio 95% CI | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1/1 | 1/2 | 2/2 | 1/1 | 1/2 | 2/2 | |||||||||||
(%) | (%) | (%) | (%) | (%) | (%) | |||||||||||
rs2071374 | 2 | 113537352 | IL1A | A | C | 0.30 | 0.27 | 0.67 | 453 | 392 | 85 | 2751 | 2067 | 376 | 0.006 | 1.16 1.04-1.30 |
(48.7) | (42.2) | (9.1) | (53.0) | (39.8) | (7.2) | |||||||||||
rs2228576 | 12 | 6457062 | TNFRSF1A | G | A | 0.33 | 0.36 | 0.43 | 414 | 419 | 94 | 2136 | 2349 | 678 | 0.009 | 0.87 0.78-0.97 |
(44.7) | (45.2) | (10.1) | (41.4) | (45.5) | (13.1) | |||||||||||
rs11836136 | 12 | 110006512 | MVK | A | G | 0.29 | 0.26 | 1.00 | 460 | 380 | 74 | 2857 | 1992 | 347 | 0.006 | 1.17 1.04-1.30 |
(50.3) | (41.6) | (8.1) | (55.0) | (38.3) | (6.7) | |||||||||||
rs7957619 | 12 | 110013879 | MVK | G | A | 0.14 | 0.11 | 0.33 | 699 | 210 | 21 | 4099 | 1027 | 73 | 0.005 | 1.231.07-1.43 |
(75.2) | (22.6) | (2.3) | (78.8) | (19.8) | (1.4) |